Structure, Biosynthesis and Analysis of Proteins

Course objectives

General aims This course aims to lead students to a deeper knowledge on folds and folding of proteins and protein complexes, to enable them to present/disseminate/discuss specific protein structure-function relationships, and to introduce them to current knowledge on "molecular machines”. Specific aims • Preliminary knowledge Basic notions of protein structure (indispensable), molecular biology (indispensable), genetics (important) and cellular biology (important) • Knowledge of the student at the end of the course: Students will acquire knowledge of the complex dynamic events that bring the newly formed polypeptides to assume 3D structures and biological functions, and will familiarize with the main methodologies in protein structure determination. • Acquired skills of the student with this course: At the end of the course, students will be able to query protein 3D databases, and to create publication quality images and movies by molecular graphics. • Critical and judgmental skills acquired at the end of the course: Students will know how to discuss in depth structure-function relationships of specific proteins, to interpret in a structural key the biological consequences of genetic mutations, and to address the design of modified protein structures. • Communication skills on course content: The final assessment intends to evaluate acquired knowledge, but also student skills in the use of molecular graphic programs, both in research and in result dissemination. • Ability to continue independently From the knowledge of the addressed topics, students will have acquired the cultural background and the prerequisite skills to face a wide range of Protein Biochemistry issues.

Channel 1
ALESSANDRO PAIARDINI Lecturers' profile

Program - Frequency - Exams

Course program
Amino Acids - physico-chemical properties and structure Visualizing Macromolecules with molecular viewers Protein Sequence Databases Protein Sequence Alignments The Peptide Bond in vitro and in Vivo Secondary Structure Tertiary Structure - Protein Stability and Folding Domains, Motifs, Modules and Repeats - Quaternary Structure Electron Microscopy and X-ray crystallography Nuclear Magnetic Resonance of Proteins Protein Structure Prediction Molecular Dynamics and Drug Design Selected examples of Protein mechanisms
Prerequisites
Basic knowledge of Biochemistry and Molecular Biology
Books
C. I. Branden, J. Tooze. Introduction to protein structure. Garland science David Whitford, PROTEINS STRUCTURE AND FUNCTION (Wiley) http://books.google.it/books?id=qbHLkxbXY4YC Fondamenti di Biochimica Voet D & Voet JG. (Zanichelli) "Struttura e Funzione delle Proteine” Petsko & Ringe
Teaching mode
The course consists of lessons and lectures that cover the main topics of the program, and practical sessions. Practical sessions are carried out in a computer room with the use of open source software for the visualization of the tridimensional structure of macromolecules.
Frequency
Frequence is not mandatory, but highly suggested.
Exam mode
Final assessment: Exercises on PC + Oral exam
Bibliography
https://elearning.uniroma1.it/course/view.php?id=4942
Lesson mode
The course consists of lessons and lectures that cover the main topics of the program, and practical sessions. Practical sessions are carried out in a computer room with the use of open source software for the visualization of the tridimensional structure of macromolecules.
ALESSANDRO PAIARDINI Lecturers' profile

Program - Frequency - Exams

Course program
Amino Acids - physico-chemical properties and structure Visualizing Macromolecules with molecular viewers Protein Sequence Databases Protein Sequence Alignments The Peptide Bond in vitro and in Vivo Secondary Structure Tertiary Structure - Protein Stability and Folding Domains, Motifs, Modules and Repeats - Quaternary Structure Electron Microscopy and X-ray crystallography Nuclear Magnetic Resonance of Proteins Protein Structure Prediction Molecular Dynamics and Drug Design Selected examples of Protein mechanisms
Prerequisites
Basic knowledge of Biochemistry and Molecular Biology
Books
C. I. Branden, J. Tooze. Introduction to protein structure. Garland science David Whitford, PROTEINS STRUCTURE AND FUNCTION (Wiley) http://books.google.it/books?id=qbHLkxbXY4YC Fondamenti di Biochimica Voet D & Voet JG. (Zanichelli) "Struttura e Funzione delle Proteine” Petsko & Ringe
Teaching mode
The course consists of lessons and lectures that cover the main topics of the program, and practical sessions. Practical sessions are carried out in a computer room with the use of open source software for the visualization of the tridimensional structure of macromolecules.
Frequency
Frequence is not mandatory, but highly suggested.
Exam mode
Final assessment: Exercises on PC + Oral exam
Bibliography
https://elearning.uniroma1.it/course/view.php?id=4942
Lesson mode
The course consists of lessons and lectures that cover the main topics of the program, and practical sessions. Practical sessions are carried out in a computer room with the use of open source software for the visualization of the tridimensional structure of macromolecules.
  • Lesson code1051868
  • Academic year2024/2025
  • CourseGenetics and Molecular Biology
  • CurriculumGenetics and Molecular Biology (percorso valido anche ai fini del conseguimento del doppio titolo italo-francese) - in lingua inglese
  • Year1st year
  • Semester2nd semester
  • SSDBIO/10
  • CFU6
  • Subject areaDiscipline del settore biomolecolare