10600157 | Molecular bases of cellular functions | 1st | 6 | MED/46, BIO/13 | ITA |
Educational objectives The course aims to provide knowledge of i) the molecular mechanisms controlling physiological cellular functions (e.g., cell proliferation, death, senescence, differentiation), ii) how the cell regulates these functions in response to stimuli from the tissue microenvironment, iii) how it integrates these signals in order to contribute to the tissue homeostasis, iv) the alterations found in different physio-pathological conditions. The neoplastic transformation will be used as a paradigm of deregulations involving multi-level cellular function, and the liver as example of organ for physio-pathological studies. The student, once acquired knowledge of the mechanisms that regulate cell functions, will acquire skills to propose experimental approaches for the analysis of these functions both in vitro and in vivo.
These skills will be developed through simulations of scientific problems in interactive lessons, where students will develop critical skills, will apply the acquired knowledge and will discuss collectively the possible experimental approaches for their solving.
Biocomuputing module:
To acquire proficiency in using the Unix shell as a fundamental tool for automating repetitive tasks and efficiently managing complex workflows. Students will learn how to combine commands to build operational pipelines and apply shell usage to advanced data processing tasks, with a particular focus on applications in high-performance computing (HPC) and bioinformatics analysis.
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Molecular bases of cellular functions I | 1st | 1 | MED/46 | ITA |
Educational objectives The course aims to provide knowledge of i) the molecular mechanisms controlling physiological cellular functions (e.g., cell proliferation, death, senescence, differentiation), ii) how the cell regulates these functions in response to stimuli from the tissue microenvironment, iii) how it integrates these signals in order to contribute to the tissue homeostasis, iv) the alterations found in different physio-pathological conditions. The neoplastic transformation will be used as a paradigm of deregulations involving multi-level cellular function, and the liver as example of organ for physio-pathological studies. The student, once acquired knowledge of the mechanisms that regulate cell functions, will acquire skills to propose experimental approaches for the analysis of these functions both in vitro and in vivo.
These skills will be developed through simulations of scientific problems in interactive lessons, where students will develop critical skills, will apply the acquired knowledge and will discuss collectively the possible experimental approaches for their solving.
Biocomuputing module:
To acquire proficiency in using the Unix shell as a fundamental tool for automating repetitive tasks and efficiently managing complex workflows. Students will learn how to combine commands to build operational pipelines and apply shell usage to advanced data processing tasks, with a particular focus on applications in high-performance computing (HPC) and bioinformatics analysis.
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Biiocomputing | 1st | 5 | BIO/13 | ITA |
Educational objectives The course aims to provide knowledge of i) the molecular mechanisms controlling physiological cellular functions (e.g., cell proliferation, death, senescence, differentiation), ii) how the cell regulates these functions in response to stimuli from the tissue microenvironment, iii) how it integrates these signals in order to contribute to the tissue homeostasis, iv) the alterations found in different physio-pathological conditions. The neoplastic transformation will be used as a paradigm of deregulations involving multi-level cellular function, and the liver as example of organ for physio-pathological studies. The student, once acquired knowledge of the mechanisms that regulate cell functions, will acquire skills to propose experimental approaches for the analysis of these functions both in vitro and in vivo.
These skills will be developed through simulations of scientific problems in interactive lessons, where students will develop critical skills, will apply the acquired knowledge and will discuss collectively the possible experimental approaches for their solving.
Biocomuputing module:
To acquire proficiency in using the Unix shell as a fundamental tool for automating repetitive tasks and efficiently managing complex workflows. Students will learn how to combine commands to build operational pipelines and apply shell usage to advanced data processing tasks, with a particular focus on applications in high-performance computing (HPC) and bioinformatics analysis.
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10621324 | Communication between organs and systems: homeostatic and regenerative mechanisms | 1st | 9 | BIO/16, BIO/17, BIO/09 | ITA |
Educational objectives The course aims to provide students with advanced theoretical and methodological knowledge in the field of tissue, organ, and system homeostasis and regeneration. Particular emphasis will be placed on defining the processes of regeneration and physiological repair of various tissues and organs, as well as on the morphological and histopathological features of aberrant or limited tissue regeneration.
The course will also cover the mechanisms of communication between organs in order to understand their reciprocal influences, both under physiological conditions and in pathological contexts.
Classical and innovative technologies (such as imaging techniques) for observing and analyzing the microarchitecture of tissues and organs during the different phases of renewal and lesion repair will be discussed. Preclinical approaches will also be described, with an in-depth focus on techniques and challenges related to preclinical experimentation.
The course will thoroughly discuss the molecular and cellular mechanisms underlying tissue regeneration in humans and in other animal species, with the aim of characterizing processes that have been silenced during evolution, as well as the mechanisms of regeneration and repair in different adult tissues. Special emphasis will be given to the development and characterization of stem cell niches (both embryonic and adult) and to the generation of induced pluripotent stem cells
(iPS). The importance of the tissue niche in mediating the differentiation fate of stem cells and the factors that define the tissue microenvironment will also be discussed.
By the end of the course, students will have acquired knowledge and skills related to some of the most recent biotechnological and preclinical applications for the development of advanced therapies aimed at the regeneration of tissues and organs in various body systems.
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Communication between organs and systems | 1st | 2 | BIO/16 | ITA |
Educational objectives The course aims to provide students with advanced theoretical and methodological knowledge in the field of tissue, organ, and system homeostasis and regeneration. Particular emphasis will be placed on defining the processes of regeneration and physiological repair of various tissues and organs, as well as on the morphological and histopathological features of aberrant or limited tissue regeneration.
The course will also cover the mechanisms of communication between organs in order to understand their reciprocal influences, both under physiological conditions and in pathological contexts.
Classical and innovative technologies (such as imaging techniques) for observing and analyzing the microarchitecture of tissues and organs during the different phases of renewal and lesion repair will be discussed. Preclinical approaches will also be described, with an in-depth focus on techniques and challenges related to preclinical experimentation.
The course will thoroughly discuss the molecular and cellular mechanisms underlying tissue regeneration in humans and in other animal species, with the aim of characterizing processes that have been silenced during evolution, as well as the mechanisms of regeneration and repair in different adult tissues. Special emphasis will be given to the development and characterization of stem cell niches (both embryonic and adult) and to the generation of induced pluripotent stem cells
(iPS). The importance of the tissue niche in mediating the differentiation fate of stem cells and the factors that define the tissue microenvironment will also be discussed.
By the end of the course, students will have acquired knowledge and skills related to some of the most recent biotechnological and preclinical applications for the development of advanced therapies aimed at the regeneration of tissues and organs in various body systems.
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Communication between organs and systems II | 1st | 5 | BIO/17 | ITA |
Educational objectives The course aims to provide students with advanced theoretical and methodological knowledge in the field of tissue, organ, and system homeostasis and regeneration. Particular emphasis will be placed on defining the processes of regeneration and physiological repair of various tissues and organs, as well as on the morphological and histopathological features of aberrant or limited tissue regeneration.
The course will also cover the mechanisms of communication between organs in order to understand their reciprocal influences, both under physiological conditions and in pathological contexts.
Classical and innovative technologies (such as imaging techniques) for observing and analyzing the microarchitecture of tissues and organs during the different phases of renewal and lesion repair will be discussed. Preclinical approaches will also be described, with an in-depth focus on techniques and challenges related to preclinical experimentation.
The course will thoroughly discuss the molecular and cellular mechanisms underlying tissue regeneration in humans and in other animal species, with the aim of characterizing processes that have been silenced during evolution, as well as the mechanisms of regeneration and repair in different adult tissues. Special emphasis will be given to the development and characterization of stem cell niches (both embryonic and adult) and to the generation of induced pluripotent stem cells
(iPS). The importance of the tissue niche in mediating the differentiation fate of stem cells and the factors that define the tissue microenvironment will also be discussed.
By the end of the course, students will have acquired knowledge and skills related to some of the most recent biotechnological and preclinical applications for the development of advanced therapies aimed at the regeneration of tissues and organs in various body systems.
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Communication between organs and systems III | 1st | 2 | BIO/09 | ITA |
Educational objectives The course aims to provide students with advanced theoretical and methodological knowledge in the field of tissue, organ, and system homeostasis and regeneration. Particular emphasis will be placed on defining the processes of regeneration and physiological repair of various tissues and organs, as well as on the morphological and histopathological features of aberrant or limited tissue regeneration.
The course will also cover the mechanisms of communication between organs in order to understand their reciprocal influences, both under physiological conditions and in pathological contexts.
Classical and innovative technologies (such as imaging techniques) for observing and analyzing the microarchitecture of tissues and organs during the different phases of renewal and lesion repair will be discussed. Preclinical approaches will also be described, with an in-depth focus on techniques and challenges related to preclinical experimentation.
The course will thoroughly discuss the molecular and cellular mechanisms underlying tissue regeneration in humans and in other animal species, with the aim of characterizing processes that have been silenced during evolution, as well as the mechanisms of regeneration and repair in different adult tissues. Special emphasis will be given to the development and characterization of stem cell niches (both embryonic and adult) and to the generation of induced pluripotent stem cells
(iPS). The importance of the tissue niche in mediating the differentiation fate of stem cells and the factors that define the tissue microenvironment will also be discussed.
By the end of the course, students will have acquired knowledge and skills related to some of the most recent biotechnological and preclinical applications for the development of advanced therapies aimed at the regeneration of tissues and organs in various body systems.
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10621328 | Structural biology and protein engineering | 1st | 9 | BIO/10, BIO/11 | ITA |
Educational objectives Understand the main methodologies for determining protein structures.
Learn the main methods used in proteomic analysis, the types of data generated, and their key limitations.
Determine the thermodynamic stability of proteins and understand their mechanisms of folding. Mechanisms of aggregation and fibrillogenesis. Intermolecular interactions: binding affinity and association/dissociation rate constants.
Learn the general principles of the design, heterologous production and mutagenesis of proteins.
Acquire capacity of critical reading of scientific papers.
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Structural biology and protein engineering I | 1st | 4 | BIO/10 | ITA |
Educational objectives Understand the main methodologies for determining protein structures.
Learn the main methods used in proteomic analysis, the types of data generated, and their key limitations.
Determine the thermodynamic stability of proteins and understand their mechanisms of folding. Mechanisms of aggregation and fibrillogenesis. Intermolecular interactions: binding affinity and association/dissociation rate constants.
Learn the general principles of the design, heterologous production and mutagenesis of proteins.
Acquire capacity of critical reading of scientific papers.
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1026831 | MOLECULAR VIROLOGY AND PARASSITOLOGY | 1st | 6 | MED/07, VET/06 | ITA |
Educational objectives The course objectives are as follows:
To understand the key theories regarding the origin and evolution of viruses and parasites.
To provide students with a comprehensive understanding of the biological and molecular processes involved in the interaction between microorganisms and hosts, as well as in pathogenicity.
To explore the causes and mechanisms behind major viral and parasitic diseases.
To study the molecular mechanisms involved in antiviral resistance.
To learn about the application of key biotechnologies in the diagnosis, prevention, and treatment of infectious diseases.
These goals will be achieved through traditional lectures, seminars, and interactive activities.
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THREE-DIMENSIONAL MODELING | 1st | 3 | MED/07 | ITA |
Educational objectives The course objectives are as follows:
To understand the key theories regarding the origin and evolution of viruses and parasites.
To provide students with a comprehensive understanding of the biological and molecular processes involved in the interaction between microorganisms and hosts, as well as in pathogenicity.
To explore the causes and mechanisms behind major viral and parasitic diseases.
To study the molecular mechanisms involved in antiviral resistance.
To learn about the application of key biotechnologies in the diagnosis, prevention, and treatment of infectious diseases.
These goals will be achieved through traditional lectures, seminars, and interactive activities.
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THREE-DIMENSIONAL MODELING | 1st | 3 | VET/06 | ITA |
Educational objectives The course objectives are as follows:
To understand the key theories regarding the origin and evolution of viruses and parasites.
To provide students with a comprehensive understanding of the biological and molecular processes involved in the interaction between microorganisms and hosts, as well as in pathogenicity.
To explore the causes and mechanisms behind major viral and parasitic diseases.
To study the molecular mechanisms involved in antiviral resistance.
To learn about the application of key biotechnologies in the diagnosis, prevention, and treatment of infectious diseases.
These goals will be achieved through traditional lectures, seminars, and interactive activities.
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10621295 | Principles of bioethics and national and EU regulations for biotechnological inventions | 1st | 3 | MED/02 | ITA |
Educational objectives Knowledge of ethical principles and the relevant soft law and regulatory framework for the field of biomedical biotechnology. Knowledge and application of the principles and rules of research ethics in biomedical research and clinical trials. Knowledge of the principles and rules of integrity in research and ability to identify major instances of research misconduct.
Analysis of international charters and relevant guideline documents. Analysis of model consent informed consent and disclosures for participants in experimental activities. Knowledge and ability to apply of the main legal instruments protecting the fundamental rights and freedoms inherent in the processing of personal data in health care and scientific research. Ethical evaluation of a research. Evaluation of ethical and biojuridical aspects of advanced therapies.
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10621328 | Structural biology and protein engineering | 2nd | 9 | BIO/10, BIO/11 | ITA |
Educational objectives Understand the main methodologies for determining protein structures.
Learn the main methods used in proteomic analysis, the types of data generated, and their key limitations.
Determine the thermodynamic stability of proteins and understand their mechanisms of folding. Mechanisms of aggregation and fibrillogenesis. Intermolecular interactions: binding affinity and association/dissociation rate constants.
Learn the general principles of the design, heterologous production and mutagenesis of proteins.
Acquire capacity of critical reading of scientific papers.
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Structural biology and protein engineering II | 2nd | 2 | BIO/10 | ITA |
Educational objectives Understand the main methodologies for determining protein structures.
Learn the main methods used in proteomic analysis, the types of data generated, and their key limitations.
Determine the thermodynamic stability of proteins and understand their mechanisms of folding. Mechanisms of aggregation and fibrillogenesis. Intermolecular interactions: binding affinity and association/dissociation rate constants.
Learn the general principles of the design, heterologous production and mutagenesis of proteins.
Acquire capacity of critical reading of scientific papers.
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Structural biology and protein engineering III | 2nd | 3 | BIO/11 | ITA |
Educational objectives Understand the main methodologies for determining protein structures.
Learn the main methods used in proteomic analysis, the types of data generated, and their key limitations.
Determine the thermodynamic stability of proteins and understand their mechanisms of folding. Mechanisms of aggregation and fibrillogenesis. Intermolecular interactions: binding affinity and association/dissociation rate constants.
Learn the general principles of the design, heterologous production and mutagenesis of proteins.
Acquire capacity of critical reading of scientific papers.
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10621447 | Computational biology and molecular dynamics | 2nd | 9 | MED/46, ING-IND/06, BIO/10, MED/04 | ITA |
Educational objectives The course aims to provide students with theoretical and practical knowledge related to the application of computational methodologies to the study of complex biological systems,
with particular reference to the analysis of omics big data, the use of bioinformatics tools, and the use of molecular dynamics and machine learning techniques.
Module 1 - Big Data and Omics Science
Knowledge and Understanding
Know the basic Unix/Linux shell commands for filesystem management.
Become familiar with the basic concepts of genomics and transcriptomics and the main sequencing technologies (first, second and third generation).
Understand the organization and content of major biological databases.
Ability to apply knowledge and understanding
Use shell commands to manipulate files, folders, data streams, and filters (e.g., grep) in big data environments.
Apply bioinformatics tools for gene expression analysis, functional annotation, and genomic visualization (e.g., UCSC Genome Browser).
Leverage web tools for differential analysis and functional enrichment.
Autonomy of judgment
Critically evaluate bioinformatics tools, methods, and resources used for omics data analysis.
Select the most appropriate strategies for querying, integrating, and analyzing large biological datasets.
Communication Skills
Effectively present and discuss the results of bioinformatics analyses, using correct scientific terminology and digital communication tools.
Learning skills
Develop an autonomous and proactive approach to continuous learning in bioinformatics and omics sciences, with emphasis on updating digital resources and databases.
Module 3 - Computational Biology and Molecular Dynamics
Knowledge and Understanding
Gain up-to-date knowledge of computational methodologies for structural analysis of biomolecules, including molecular docking, protein modeling and molecular dynamics.
Understand the relationships between protein structure, dynamics and function.
Ability to apply knowledge and understanding
Use tools for scientific computational sessions and structural analysis of proteins.
Model the three-dimensional structure of proteins and simulate the molecular dynamics of soluble and membrane proteins, as well as ligand/protein interactions.
Access databases to complete, validate and analyze structural models.
Critically interpret simulation results and estimate their biophysical relevance.
Autonomy of judgment
Independently assess the quality of computational and experimental data.
Make informed judgments about the reliability of biological models obtained from simulations or predictions.
Communication Skills
Communicate methods, results, and conclusions effectively to specialist and non-specialist interlocutors, including in interdisciplinary settings.
Learning skills
Conduct autonomous computational investigations, including in advanced research settings, while maintaining up-to-date technical and scientific skills.
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Computational biology and molecular dynamics I | 2nd | 3 | MED/46 | ITA |
Educational objectives The course aims to provide students with theoretical and practical knowledge related to the application of computational methodologies to the study of complex biological systems,
with particular reference to the analysis of omics big data, the use of bioinformatics tools, and the use of molecular dynamics and machine learning techniques.
Module 1 - Big Data and Omics Science
Knowledge and Understanding
Know the basic Unix/Linux shell commands for filesystem management.
Become familiar with the basic concepts of genomics and transcriptomics and the main sequencing technologies (first, second and third generation).
Understand the organization and content of major biological databases.
Ability to apply knowledge and understanding
Use shell commands to manipulate files, folders, data streams, and filters (e.g., grep) in big data environments.
Apply bioinformatics tools for gene expression analysis, functional annotation, and genomic visualization (e.g., UCSC Genome Browser).
Leverage web tools for differential analysis and functional enrichment.
Autonomy of judgment
Critically evaluate bioinformatics tools, methods, and resources used for omics data analysis.
Select the most appropriate strategies for querying, integrating, and analyzing large biological datasets.
Communication Skills
Effectively present and discuss the results of bioinformatics analyses, using correct scientific terminology and digital communication tools.
Learning skills
Develop an autonomous and proactive approach to continuous learning in bioinformatics and omics sciences, with emphasis on updating digital resources and databases.
Module 3 - Computational Biology and Molecular Dynamics
Knowledge and Understanding
Gain up-to-date knowledge of computational methodologies for structural analysis of biomolecules, including molecular docking, protein modeling and molecular dynamics.
Understand the relationships between protein structure, dynamics and function.
Ability to apply knowledge and understanding
Use tools for scientific computational sessions and structural analysis of proteins.
Model the three-dimensional structure of proteins and simulate the molecular dynamics of soluble and membrane proteins, as well as ligand/protein interactions.
Access databases to complete, validate and analyze structural models.
Critically interpret simulation results and estimate their biophysical relevance.
Autonomy of judgment
Independently assess the quality of computational and experimental data.
Make informed judgments about the reliability of biological models obtained from simulations or predictions.
Communication Skills
Communicate methods, results, and conclusions effectively to specialist and non-specialist interlocutors, including in interdisciplinary settings.
Learning skills
Conduct autonomous computational investigations, including in advanced research settings, while maintaining up-to-date technical and scientific skills.
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Computational biology and molecular dynamics II | 2nd | 3 | ING-IND/06 | ITA |
Educational objectives The course aims to provide students with theoretical and practical knowledge related to the application of computational methodologies to the study of complex biological systems,
with particular reference to the analysis of omics big data, the use of bioinformatics tools, and the use of molecular dynamics and machine learning techniques.
Module 1 - Big Data and Omics Science
Knowledge and Understanding
Know the basic Unix/Linux shell commands for filesystem management.
Become familiar with the basic concepts of genomics and transcriptomics and the main sequencing technologies (first, second and third generation).
Understand the organization and content of major biological databases.
Ability to apply knowledge and understanding
Use shell commands to manipulate files, folders, data streams, and filters (e.g., grep) in big data environments.
Apply bioinformatics tools for gene expression analysis, functional annotation, and genomic visualization (e.g., UCSC Genome Browser).
Leverage web tools for differential analysis and functional enrichment.
Autonomy of judgment
Critically evaluate bioinformatics tools, methods, and resources used for omics data analysis.
Select the most appropriate strategies for querying, integrating, and analyzing large biological datasets.
Communication Skills
Effectively present and discuss the results of bioinformatics analyses, using correct scientific terminology and digital communication tools.
Learning skills
Develop an autonomous and proactive approach to continuous learning in bioinformatics and omics sciences, with emphasis on updating digital resources and databases.
Module 3 - Computational Biology and Molecular Dynamics
Knowledge and Understanding
Gain up-to-date knowledge of computational methodologies for structural analysis of biomolecules, including molecular docking, protein modeling and molecular dynamics.
Understand the relationships between protein structure, dynamics and function.
Ability to apply knowledge and understanding
Use tools for scientific computational sessions and structural analysis of proteins.
Model the three-dimensional structure of proteins and simulate the molecular dynamics of soluble and membrane proteins, as well as ligand/protein interactions.
Access databases to complete, validate and analyze structural models.
Critically interpret simulation results and estimate their biophysical relevance.
Autonomy of judgment
Independently assess the quality of computational and experimental data.
Make informed judgments about the reliability of biological models obtained from simulations or predictions.
Communication Skills
Communicate methods, results, and conclusions effectively to specialist and non-specialist interlocutors, including in interdisciplinary settings.
Learning skills
Conduct autonomous computational investigations, including in advanced research settings, while maintaining up-to-date technical and scientific skills.
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Computational biology and molecular dynamics III | 2nd | 1 | BIO/10 | ITA |
Educational objectives The course aims to provide students with theoretical and practical knowledge related to the application of computational methodologies to the study of complex biological systems,
with particular reference to the analysis of omics big data, the use of bioinformatics tools, and the use of molecular dynamics and machine learning techniques.
Module 1 - Big Data and Omics Science
Knowledge and Understanding
Know the basic Unix/Linux shell commands for filesystem management.
Become familiar with the basic concepts of genomics and transcriptomics and the main sequencing technologies (first, second and third generation).
Understand the organization and content of major biological databases.
Ability to apply knowledge and understanding
Use shell commands to manipulate files, folders, data streams, and filters (e.g., grep) in big data environments.
Apply bioinformatics tools for gene expression analysis, functional annotation, and genomic visualization (e.g., UCSC Genome Browser).
Leverage web tools for differential analysis and functional enrichment.
Autonomy of judgment
Critically evaluate bioinformatics tools, methods, and resources used for omics data analysis.
Select the most appropriate strategies for querying, integrating, and analyzing large biological datasets.
Communication Skills
Effectively present and discuss the results of bioinformatics analyses, using correct scientific terminology and digital communication tools.
Learning skills
Develop an autonomous and proactive approach to continuous learning in bioinformatics and omics sciences, with emphasis on updating digital resources and databases.
Module 3 - Computational Biology and Molecular Dynamics
Knowledge and Understanding
Gain up-to-date knowledge of computational methodologies for structural analysis of biomolecules, including molecular docking, protein modeling and molecular dynamics.
Understand the relationships between protein structure, dynamics and function.
Ability to apply knowledge and understanding
Use tools for scientific computational sessions and structural analysis of proteins.
Model the three-dimensional structure of proteins and simulate the molecular dynamics of soluble and membrane proteins, as well as ligand/protein interactions.
Access databases to complete, validate and analyze structural models.
Critically interpret simulation results and estimate their biophysical relevance.
Autonomy of judgment
Independently assess the quality of computational and experimental data.
Make informed judgments about the reliability of biological models obtained from simulations or predictions.
Communication Skills
Communicate methods, results, and conclusions effectively to specialist and non-specialist interlocutors, including in interdisciplinary settings.
Learning skills
Conduct autonomous computational investigations, including in advanced research settings, while maintaining up-to-date technical and scientific skills.
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Computational biology and molecular dynamics IV | 2nd | 2 | MED/04 | ITA |
Educational objectives The course aims to provide students with theoretical and practical knowledge related to the application of computational methodologies to the study of complex biological systems,
with particular reference to the analysis of omics big data, the use of bioinformatics tools, and the use of molecular dynamics and machine learning techniques.
Module 1 - Big Data and Omics Science
Knowledge and Understanding
Know the basic Unix/Linux shell commands for filesystem management.
Become familiar with the basic concepts of genomics and transcriptomics and the main sequencing technologies (first, second and third generation).
Understand the organization and content of major biological databases.
Ability to apply knowledge and understanding
Use shell commands to manipulate files, folders, data streams, and filters (e.g., grep) in big data environments.
Apply bioinformatics tools for gene expression analysis, functional annotation, and genomic visualization (e.g., UCSC Genome Browser).
Leverage web tools for differential analysis and functional enrichment.
Autonomy of judgment
Critically evaluate bioinformatics tools, methods, and resources used for omics data analysis.
Select the most appropriate strategies for querying, integrating, and analyzing large biological datasets.
Communication Skills
Effectively present and discuss the results of bioinformatics analyses, using correct scientific terminology and digital communication tools.
Learning skills
Develop an autonomous and proactive approach to continuous learning in bioinformatics and omics sciences, with emphasis on updating digital resources and databases.
Module 3 - Computational Biology and Molecular Dynamics
Knowledge and Understanding
Gain up-to-date knowledge of computational methodologies for structural analysis of biomolecules, including molecular docking, protein modeling and molecular dynamics.
Understand the relationships between protein structure, dynamics and function.
Ability to apply knowledge and understanding
Use tools for scientific computational sessions and structural analysis of proteins.
Model the three-dimensional structure of proteins and simulate the molecular dynamics of soluble and membrane proteins, as well as ligand/protein interactions.
Access databases to complete, validate and analyze structural models.
Critically interpret simulation results and estimate their biophysical relevance.
Autonomy of judgment
Independently assess the quality of computational and experimental data.
Make informed judgments about the reliability of biological models obtained from simulations or predictions.
Communication Skills
Communicate methods, results, and conclusions effectively to specialist and non-specialist interlocutors, including in interdisciplinary settings.
Learning skills
Conduct autonomous computational investigations, including in advanced research settings, while maintaining up-to-date technical and scientific skills.
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10621344 | Immunology and immunopathology - Molecular and cellular pathology | 2nd | 12 | MED/04, MED/04, MED/46, MED/46 | ITA |
Educational objectives General objectives:
The main objective of the teaching is to provide the student with more knowledge in the fields of immunology and diseases associated with the immune system, as well as with general pathology. The deepening of the cellular and molecular processes underlying different diseases, and of the new diagnosis and therapeutic tools offered by biotechnologies, will offer the student an up-to-date view on the different possibilities of diagnosis and therapy.
Lectures will help to develop competences on the etiopathogenic bases of diseases, fundamental for a biotechnological medical approach to themselves.
Specific objectives:
The Immunology and Immunopathology part of the course is aimed at providing the students with the basic knowledge on the molecular mechanisms underlying the main immune-mediated disorders in humans, and how they can be exploited for innovative biotechnology-based diagnostic and therapeutic interventions.
Particular attention will be given to the study of chronic inflammatory diseases, response to infections, allergic reactions, rejection of organ and tissue transplants, immunotherapies of tumors and primary immunodeficiencies.
The part of the course related to Molecular and Cellular Pathology aims to provide the basic knowledge to make the student able to understand the molecular and cellular mechanisms that regulate pathological processes in humans. In recent years, important discoveries have highlighted the importance of the study of pathologies both at the cellular and molecular level. The knowledge of the molecular processes that underlie diseases allows the development of new biological therapies, demonstrating how fundamental the analysis of the molecular and cellular aspect is, generating new questions and opening up to further analysis. The knowledge of the pathogenetic mechanisms of human diseases, at the molecular and cellular level, allows to create the necessary substrate for a biotechnological approach in different fields, such as prevention, diagnosis, treatment, and clinical aspects of human diseases. In particular, the focus will be on the molecular and cellular bases of those human diseases whose incidence has increased in recent years, in relation to the fact that the average age of the human population has grown. Therefore, diseases such as malignancies and chronic degenerative diseases – e.g., diabetes and atherosclerosis - will be discussed. The pathogenetic mechanisms of non-coding RNA (microRNA and long non-coding RNA) will be also examined. Molecular mechanisms regulating the maintenance of stem cells, their use for therapeutic purposes and the involvement of cancer stem cells in the maintenance of tumor processes will be described. The methods of next generation sequencing (NGS) and some practical examples will be discussed as well.
For both modules, among the specific objectives that the student will achieve at the end of the course, there will be:
- the ability to perform bibliographic searches in international scientific databases (eg PubMed);
- the ability to select scientific articles on the topics covered during the course;
- the ability to understand and elaborate a scientific article in English;
- the integration of the knowledge acquired during the course with the international scientific literature;
- the ability to communicate orally, through a computer presentation (with the power point program), the results described in a scientific article;
- the ability to study autonomously, self-administered and integrating material from multiple sources (textbooks, material provided by teachers, scientific literature).
The ability to search scientific data and literature on specific subjects, the ability to assess the impact that the various scientific journals have in the international community, together with the knowledge and skills in the field of immunology and pathology, will provide the student with useful and crucial tools for consulting multiple sources, developing research projects, analyzing data, communicating results, and gaining more knowledge on some of the latest biotechnological innovations applied in the biomedical field.
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Immunology and immunopathology - Molecular and cellular pathology I | 2nd | 4 | MED/04, MED/04 | ITA |
Educational objectives General objectives:
The main objective of the teaching is to provide the student with more knowledge in the fields of immunology and diseases associated with the immune system, as well as with general pathology. The deepening of the cellular and molecular processes underlying different diseases, and of the new diagnosis and therapeutic tools offered by biotechnologies, will offer the student an up-to-date view on the different possibilities of diagnosis and therapy.
Lectures will help to develop competences on the etiopathogenic bases of diseases, fundamental for a biotechnological medical approach to themselves.
Specific objectives:
The Immunology and Immunopathology part of the course is aimed at providing the students with the basic knowledge on the molecular mechanisms underlying the main immune-mediated disorders in humans, and how they can be exploited for innovative biotechnology-based diagnostic and therapeutic interventions.
Particular attention will be given to the study of chronic inflammatory diseases, response to infections, allergic reactions, rejection of organ and tissue transplants, immunotherapies of tumors and primary immunodeficiencies.
The part of the course related to Molecular and Cellular Pathology aims to provide the basic knowledge to make the student able to understand the molecular and cellular mechanisms that regulate pathological processes in humans. In recent years, important discoveries have highlighted the importance of the study of pathologies both at the cellular and molecular level. The knowledge of the molecular processes that underlie diseases allows the development of new biological therapies, demonstrating how fundamental the analysis of the molecular and cellular aspect is, generating new questions and opening up to further analysis. The knowledge of the pathogenetic mechanisms of human diseases, at the molecular and cellular level, allows to create the necessary substrate for a biotechnological approach in different fields, such as prevention, diagnosis, treatment, and clinical aspects of human diseases. In particular, the focus will be on the molecular and cellular bases of those human diseases whose incidence has increased in recent years, in relation to the fact that the average age of the human population has grown. Therefore, diseases such as malignancies and chronic degenerative diseases – e.g., diabetes and atherosclerosis - will be discussed. The pathogenetic mechanisms of non-coding RNA (microRNA and long non-coding RNA) will be also examined. Molecular mechanisms regulating the maintenance of stem cells, their use for therapeutic purposes and the involvement of cancer stem cells in the maintenance of tumor processes will be described. The methods of next generation sequencing (NGS) and some practical examples will be discussed as well.
For both modules, among the specific objectives that the student will achieve at the end of the course, there will be:
- the ability to perform bibliographic searches in international scientific databases (eg PubMed);
- the ability to select scientific articles on the topics covered during the course;
- the ability to understand and elaborate a scientific article in English;
- the integration of the knowledge acquired during the course with the international scientific literature;
- the ability to communicate orally, through a computer presentation (with the power point program), the results described in a scientific article;
- the ability to study autonomously, self-administered and integrating material from multiple sources (textbooks, material provided by teachers, scientific literature).
The ability to search scientific data and literature on specific subjects, the ability to assess the impact that the various scientific journals have in the international community, together with the knowledge and skills in the field of immunology and pathology, will provide the student with useful and crucial tools for consulting multiple sources, developing research projects, analyzing data, communicating results, and gaining more knowledge on some of the latest biotechnological innovations applied in the biomedical field.
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Immunology and immunopathology - Molecular and cellular pathology II | 2nd | 3 | MED/04 | ITA |
Educational objectives General objectives:
The main objective of the teaching is to provide the student with more knowledge in the fields of immunology and diseases associated with the immune system, as well as with general pathology. The deepening of the cellular and molecular processes underlying different diseases, and of the new diagnosis and therapeutic tools offered by biotechnologies, will offer the student an up-to-date view on the different possibilities of diagnosis and therapy.
Lectures will help to develop competences on the etiopathogenic bases of diseases, fundamental for a biotechnological medical approach to themselves.
Specific objectives:
The Immunology and Immunopathology part of the course is aimed at providing the students with the basic knowledge on the molecular mechanisms underlying the main immune-mediated disorders in humans, and how they can be exploited for innovative biotechnology-based diagnostic and therapeutic interventions.
Particular attention will be given to the study of chronic inflammatory diseases, response to infections, allergic reactions, rejection of organ and tissue transplants, immunotherapies of tumors and primary immunodeficiencies.
The part of the course related to Molecular and Cellular Pathology aims to provide the basic knowledge to make the student able to understand the molecular and cellular mechanisms that regulate pathological processes in humans. In recent years, important discoveries have highlighted the importance of the study of pathologies both at the cellular and molecular level. The knowledge of the molecular processes that underlie diseases allows the development of new biological therapies, demonstrating how fundamental the analysis of the molecular and cellular aspect is, generating new questions and opening up to further analysis. The knowledge of the pathogenetic mechanisms of human diseases, at the molecular and cellular level, allows to create the necessary substrate for a biotechnological approach in different fields, such as prevention, diagnosis, treatment, and clinical aspects of human diseases. In particular, the focus will be on the molecular and cellular bases of those human diseases whose incidence has increased in recent years, in relation to the fact that the average age of the human population has grown. Therefore, diseases such as malignancies and chronic degenerative diseases – e.g., diabetes and atherosclerosis - will be discussed. The pathogenetic mechanisms of non-coding RNA (microRNA and long non-coding RNA) will be also examined. Molecular mechanisms regulating the maintenance of stem cells, their use for therapeutic purposes and the involvement of cancer stem cells in the maintenance of tumor processes will be described. The methods of next generation sequencing (NGS) and some practical examples will be discussed as well.
For both modules, among the specific objectives that the student will achieve at the end of the course, there will be:
- the ability to perform bibliographic searches in international scientific databases (eg PubMed);
- the ability to select scientific articles on the topics covered during the course;
- the ability to understand and elaborate a scientific article in English;
- the integration of the knowledge acquired during the course with the international scientific literature;
- the ability to communicate orally, through a computer presentation (with the power point program), the results described in a scientific article;
- the ability to study autonomously, self-administered and integrating material from multiple sources (textbooks, material provided by teachers, scientific literature).
The ability to search scientific data and literature on specific subjects, the ability to assess the impact that the various scientific journals have in the international community, together with the knowledge and skills in the field of immunology and pathology, will provide the student with useful and crucial tools for consulting multiple sources, developing research projects, analyzing data, communicating results, and gaining more knowledge on some of the latest biotechnological innovations applied in the biomedical field.
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Immunology and immunopathology - Molecular and cellular pathology III | 2nd | 3 | MED/46 | ITA |
Educational objectives General objectives:
The main objective of the teaching is to provide the student with more knowledge in the fields of immunology and diseases associated with the immune system, as well as with general pathology. The deepening of the cellular and molecular processes underlying different diseases, and of the new diagnosis and therapeutic tools offered by biotechnologies, will offer the student an up-to-date view on the different possibilities of diagnosis and therapy.
Lectures will help to develop competences on the etiopathogenic bases of diseases, fundamental for a biotechnological medical approach to themselves.
Specific objectives:
The Immunology and Immunopathology part of the course is aimed at providing the students with the basic knowledge on the molecular mechanisms underlying the main immune-mediated disorders in humans, and how they can be exploited for innovative biotechnology-based diagnostic and therapeutic interventions.
Particular attention will be given to the study of chronic inflammatory diseases, response to infections, allergic reactions, rejection of organ and tissue transplants, immunotherapies of tumors and primary immunodeficiencies.
The part of the course related to Molecular and Cellular Pathology aims to provide the basic knowledge to make the student able to understand the molecular and cellular mechanisms that regulate pathological processes in humans. In recent years, important discoveries have highlighted the importance of the study of pathologies both at the cellular and molecular level. The knowledge of the molecular processes that underlie diseases allows the development of new biological therapies, demonstrating how fundamental the analysis of the molecular and cellular aspect is, generating new questions and opening up to further analysis. The knowledge of the pathogenetic mechanisms of human diseases, at the molecular and cellular level, allows to create the necessary substrate for a biotechnological approach in different fields, such as prevention, diagnosis, treatment, and clinical aspects of human diseases. In particular, the focus will be on the molecular and cellular bases of those human diseases whose incidence has increased in recent years, in relation to the fact that the average age of the human population has grown. Therefore, diseases such as malignancies and chronic degenerative diseases – e.g., diabetes and atherosclerosis - will be discussed. The pathogenetic mechanisms of non-coding RNA (microRNA and long non-coding RNA) will be also examined. Molecular mechanisms regulating the maintenance of stem cells, their use for therapeutic purposes and the involvement of cancer stem cells in the maintenance of tumor processes will be described. The methods of next generation sequencing (NGS) and some practical examples will be discussed as well.
For both modules, among the specific objectives that the student will achieve at the end of the course, there will be:
- the ability to perform bibliographic searches in international scientific databases (eg PubMed);
- the ability to select scientific articles on the topics covered during the course;
- the ability to understand and elaborate a scientific article in English;
- the integration of the knowledge acquired during the course with the international scientific literature;
- the ability to communicate orally, through a computer presentation (with the power point program), the results described in a scientific article;
- the ability to study autonomously, self-administered and integrating material from multiple sources (textbooks, material provided by teachers, scientific literature).
The ability to search scientific data and literature on specific subjects, the ability to assess the impact that the various scientific journals have in the international community, together with the knowledge and skills in the field of immunology and pathology, will provide the student with useful and crucial tools for consulting multiple sources, developing research projects, analyzing data, communicating results, and gaining more knowledge on some of the latest biotechnological innovations applied in the biomedical field.
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Immunology and immunopathology - Molecular and cellular pathology IV | 2nd | 2 | MED/46 | ITA |
Educational objectives General objectives:
The main objective of the teaching is to provide the student with more knowledge in the fields of immunology and diseases associated with the immune system, as well as with general pathology. The deepening of the cellular and molecular processes underlying different diseases, and of the new diagnosis and therapeutic tools offered by biotechnologies, will offer the student an up-to-date view on the different possibilities of diagnosis and therapy.
Lectures will help to develop competences on the etiopathogenic bases of diseases, fundamental for a biotechnological medical approach to themselves.
Specific objectives:
The Immunology and Immunopathology part of the course is aimed at providing the students with the basic knowledge on the molecular mechanisms underlying the main immune-mediated disorders in humans, and how they can be exploited for innovative biotechnology-based diagnostic and therapeutic interventions.
Particular attention will be given to the study of chronic inflammatory diseases, response to infections, allergic reactions, rejection of organ and tissue transplants, immunotherapies of tumors and primary immunodeficiencies.
The part of the course related to Molecular and Cellular Pathology aims to provide the basic knowledge to make the student able to understand the molecular and cellular mechanisms that regulate pathological processes in humans. In recent years, important discoveries have highlighted the importance of the study of pathologies both at the cellular and molecular level. The knowledge of the molecular processes that underlie diseases allows the development of new biological therapies, demonstrating how fundamental the analysis of the molecular and cellular aspect is, generating new questions and opening up to further analysis. The knowledge of the pathogenetic mechanisms of human diseases, at the molecular and cellular level, allows to create the necessary substrate for a biotechnological approach in different fields, such as prevention, diagnosis, treatment, and clinical aspects of human diseases. In particular, the focus will be on the molecular and cellular bases of those human diseases whose incidence has increased in recent years, in relation to the fact that the average age of the human population has grown. Therefore, diseases such as malignancies and chronic degenerative diseases – e.g., diabetes and atherosclerosis - will be discussed. The pathogenetic mechanisms of non-coding RNA (microRNA and long non-coding RNA) will be also examined. Molecular mechanisms regulating the maintenance of stem cells, their use for therapeutic purposes and the involvement of cancer stem cells in the maintenance of tumor processes will be described. The methods of next generation sequencing (NGS) and some practical examples will be discussed as well.
For both modules, among the specific objectives that the student will achieve at the end of the course, there will be:
- the ability to perform bibliographic searches in international scientific databases (eg PubMed);
- the ability to select scientific articles on the topics covered during the course;
- the ability to understand and elaborate a scientific article in English;
- the integration of the knowledge acquired during the course with the international scientific literature;
- the ability to communicate orally, through a computer presentation (with the power point program), the results described in a scientific article;
- the ability to study autonomously, self-administered and integrating material from multiple sources (textbooks, material provided by teachers, scientific literature).
The ability to search scientific data and literature on specific subjects, the ability to assess the impact that the various scientific journals have in the international community, together with the knowledge and skills in the field of immunology and pathology, will provide the student with useful and crucial tools for consulting multiple sources, developing research projects, analyzing data, communicating results, and gaining more knowledge on some of the latest biotechnological innovations applied in the biomedical field.
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AAF1041 | STAGE | 2nd | 3 | ITA |